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Proximity Graphs Documentation

  • Proximity Graphs

Contents:

  • Usage
  • Points
    • Uniform square
    • uniform_over_sphere
    • uniform_sphere
    • normal_dist
    • grid
    • hexagonal
    • triangular
    • poissonprocess_square
    • poissonprocess_circle
    • poissonprocess_inhomogeneus
    • cluster_square
    • from_geopandas
    • Transformation Methods
    • Draw
  • GeometricGraphs
    • complete(setpoints) [classmethod]
    • from_graph(graph, points, name=None) [classmethod]
    • random_graph(setpoints, p, seed=None) [classmethod]
    • Instance Methods
    • Vizualization
    • Graph Operations
    • Data Export and Conversion
  • ProximityGraph
    • Delaunay Triangulation
    • Voronoi Diagram
    • Convex Hull
    • Minimum Spanning Tree (MST)
    • Beta Skeleton
    • Gabriel Graph
    • Elliptic Gabriel Graph
    • Relative Neighborhood Graph (RNG)
    • NNG (k-nearest neighbor graph)
    • Unit Disk
    • Alpha-Shape
    • Alpha-Hull
    • Stepping Stone
    • Gamma Graph
  • Biological Graphs
    • PhysarumGraph
    • FungalGraph
  • Experiments
  • Example notebooks
    • draw2 method
    • Gamma Graph
    • Test Alpha Shapes Y Alpha Hulls
    • Plotting with method draw_grid
    • draw method
    • Test Gamma Graph
    • Test Set Points
    • EXAMPLE 1: Basic Experiment - Comparing Gabriel vs RNG
    • Testbio
    • Times
  • References
  • About

Example notebooks

Example notebooks#

These notebooks are rendered from examples_notebooks without being executed during the documentation build.

  • draw2 method
  • Customization
  • Gamma Graph
  • Single Neighborhood, 512*24=12288 points
  • Two Neighborhoods
  • Special cases, 100 points
  • Examples 100 points
  • Special cases, 1000 points
  • Examples 1000 points
  • Test Alpha Shapes Y Alpha Hulls
  • Plotting with method draw_grid
  • No method
  • draw method
  • \(\gamma\)-graph
  • Delaunay Triangulation
  • Convex Hull
  • \(\alpha\)-shape
  • \(\alpha\)-hull
  • \(\beta\)-skeleton con \(\beta \in [0, \infty)\)
  • Gabriel Graph
  • Relative Neighborhood Graph
  • MST
  • Stepping Stone
  • NNG
  • Sigma Graph
  • Unit Disk
  • SIG
  • Eliptic GG
  • Custom kwargs
  • Test Gamma Graph
  • Test Set Points
  • EXAMPLE 1: Basic Experiment - Comparing Gabriel vs RNG
  • EXAMPLE 2: Multiple Graph Types with Different Point Distributions
  • EXAMPLE 3: Custom Metrics
  • EXAMPLE 4: Biological Graphs - Physarum
  • EXAMPLE 5: Parameter Sweep
  • EXAMPLE 6: Different Point Distributions
  • EXAMPLE 7: Storing and Retrieving Graphs
  • EXAMPLE 8: Advanced - Entropy Analysis
  • EXAMPLE 9: Point Transformations
  • Testbio
  • Times

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Experiments

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draw2 method

By Héctor Maravillo , Diego Villarreal , Heriberto Espino

© Copyright 2025, Héctor Maravillo.